AGL42 AGAMOUS-like 42 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: AGL42
Official Full Name: AGAMOUS-like 42
Primary source: TAIR:AT5G62165
Locus tag: AT5G62165
See related: Araport:AT5G62165
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AGAMOUS-like 42; FOREVER YOUNG FLOWER; FYF
Summary: Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.
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Genomic context

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See AGL42 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 6

Sequence:: Chromosome: 5; NC_003076.8 (24964646..24968607)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

FYF controls floral senescence/abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA in Arabidopsis.
Title: The MADS box gene, FOREVER YOUNG FLOWER, acts as a repressor controlling floral organ senescence and abscission in Arabidopsis.
Role for AGL42 in the floral transition in the apical and axillary meristems.
Title: The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001037046.2

Supported by ESTs:

NM_001203664.2

Supported by ESTs:

NM_001203665.2

Supported by ESTs:

NM_001345528.1

Supported by ESTs:

NM_001345529.1

Supported by ESTs:

NM_001345530.1

Supported by ESTs:

NM_001345531.1

Supported by ESTs:

NM_001345532.1

Supported by ESTs:

NM_001345533.1

Supported by ESTs:

NM_001345534.1

Supported by ESTs:

NM_001345535.1

Supported by ESTs:

NM_125610.4

Supported by ESTs:

NM_180916.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within abscission	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within floral organ senescence	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within leaf senescence	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of flower development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AGAMOUS-like 42

NP_001032123.1

AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 7153 Blast hits to 7151 proteins in 910 species: Archae - 0; Bacteria - 11; Metazoa - 666; Fungi - 313; Plants - 6036; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NP_001190593.1

AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1).

NP_001190594.1

AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 (TAIR:AT5G51870.1).

NP_568952.1

AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_851247.1

AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 7152 Blast hits to 7150 proteins in 910 species: Archae - 0; Bacteria - 11; Metazoa - 666; Fungi - 313; Plants - 6035; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

24964646..24968607

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001345536.1 → NP_001330228.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q0WRE2

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 147

K-box; K-box region
NM_001345537.1 → NP_001330229.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q0WRE2

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 147

K-box; K-box region
NM_001345538.1 → NP_001330220.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q0WRE2

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 147

K-box; K-box region
NM_001345539.1 → NP_001330227.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q0WRE2

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 147

K-box; K-box region
NM_125610.4 → NP_568952.1 AGAMOUS-like 42 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568952.1

Status: REVIEWED

UniProtKB/Swiss-Prot

C0Z253, Q9FIS1

UniProtKB/TrEMBL

A0A5S9YII9, A0A654GD96

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 170

K-box; K-box region
NM_001345528.1 → NP_001330222.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FIS1

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 156

K-box; K-box region
NM_001345529.1 → NP_001330224.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA62
NM_001345530.1 → NP_001330225.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA62
NM_001345531.1 → NP_001330226.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q0WRE2

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 147

K-box; K-box region
NM_001037046.2 → NP_001032123.1 AGAMOUS-like 42 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001032123.1

Status: REVIEWED

UniProtKB/Swiss-Prot

C0Z253, Q9FIS1

UniProtKB/TrEMBL

A0A5S9YII9, A0A654GD96

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 170

K-box; K-box region
NM_001203664.2 → NP_001190593.1 AGAMOUS-like 42 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190593.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FIS1

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 156

K-box; K-box region
NM_001345532.1 → NP_001330218.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA41
NM_001345533.1 → NP_001330219.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4K6E5
NM_180916.1 → NP_851247.1 AGAMOUS-like 42 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851247.1

Status: REVIEWED

UniProtKB/Swiss-Prot

C0Z253, Q9FIS1

UniProtKB/TrEMBL

A0A5S9YII9, A0A654GD96

Conserved Domains (2) summary

cd00265
Location:3 → 78

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:82 → 170

K-box; K-box region
NM_001345534.1 → NP_001330223.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA55
NM_001203665.2 → NP_001190594.1 AGAMOUS-like 42 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190594.1

Status: REVIEWED

UniProtKB/TrEMBL

F4K6E5

Conserved Domains (1) summary

pfam01486
Location:56 → 117

K-box; K-box region
NM_001345535.1 → NP_001330221.1 AGAMOUS-like 42 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA62