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    Hyaluronan / mRNA binding family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827389, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Hyaluronan / mRNA binding family
    Primary source
    TAIR:AT4G16830
    Locus tag
    AT4G16830
    See related
    Araport:AT4G16830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4440W; FCAALL.13
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (9470370..9472594)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene VEFS-Box of polycomb protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress. Ambrosone A, et al. Plant Physiol, 2015 May. PMID 25783413, Free PMC Article
    2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtRGGA plays an important role in the mechanisms of plant response and adaptation to stress. [AtRGGA]
      Title: The Arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001084930.1
    NM_001084931.1
    NM_117785.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Hyaluronan / mRNA binding family
    NP_001078399.1
    • Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1174 Blast hits to 1093 proteins in 244 species: Archae - 2; Bacteria - 52; Metazoa - 515; Fungi - 125; Plants - 182; Viruses - 23; Other Eukaryotes - 275 (source: NCBI BLink).
    NP_001078400.1
    • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 21958 Blast hits to 10880 proteins in 1019 species: Archae - 12; Bacteria - 7276; Metazoa - 6848; Fungi - 1552; Plants - 2999; Viruses - 314; Other Eukaryotes - 2957 (source: NCBI BLink).
    NP_193416.1
    • Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9470370..9472594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117785.5 → NP_193416.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193416.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQG3, A8MQJ5, O23523
      UniProtKB/TrEMBL
      A0A178V3J2, A0A654FQ13
      Conserved Domains (2) summary
      pfam04774
      Location:147 → 252
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:1 → 66
      Stm1_N

    2. NM_001084931.1 → NP_001078400.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078400.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3J2
      Conserved Domains (1) summary
      pfam04774
      Location:137 → 242
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    3. NM_001084930.1 → NP_001078399.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078399.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23523
      Conserved Domains (1) summary
      pfam04774
      Location:57 → 162
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23523.1

    Gene LinkOut

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