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    C6h14orf180 similar to human chromosome 14 open reading frame 180 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691485, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C6h14orf180provided by RGD
    Official Full Name
    similar to human chromosome 14 open reading frame 180provided by RGD
    Primary source
    RGD:1583888
    See related
    EnsemblRapid:ENSRNOG00000085756 AllianceGenome:RGD:1583888
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in plasma membrane. Orthologous to human C14orf180 (chromosome 14 open reading frame 180). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 231.5), Adrenal (RPKM 136.8) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C6h14orf180 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (137378336..137393892)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (131557193..131568245)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137063532..137073406)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479481 Neighboring gene uncharacterized LOC102549170 Neighboring gene transmembrane protein 179 Neighboring gene uncharacterized LOC102552388 Neighboring gene inverted formin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Nrac, a novel nutritionally-regulated adipose and cardiac-enriched gene. Zhang R, et al. PLoS One, 2012. PMID 23029450, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    nutritionally-regulated adipose and cardiac enriched protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      137378336..137393892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039113399.2 → XP_038969327.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X3

      Conserved Domains (1) summary
      cl20010
      Location:46 → 105
      Consortin_C; Consortin C-terminus

    2. XM_039113396.2 → XP_038969324.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    3. XM_039113393.2 → XP_038969321.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X1

      Related
      ENSRNOP00000101743.1, ENSRNOT00000131027.1
      Conserved Domains (1) summary
      pfam15555
      Location:46 → 178
      DUF4658; Domain of unknown function (DUF4658)

    4. XM_039113395.2 → XP_038969323.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Related
      ENSRNOP00000110335.1, ENSRNOT00000133863.1
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    5. XM_039113398.2 → XP_038969326.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    6. XM_039113394.2 → XP_038969322.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    7. XM_001078490.7 → XP_001078490.2  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      See identical proteins and their annotated locations for XP_001078490.2

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    8. XM_006240652.5 → XP_006240714.1  nutritionally-regulated adipose and cardiac enriched protein homolog isoform X2

      See identical proteins and their annotated locations for XP_006240714.1

      UniProtKB/TrEMBL
      A6KBV0, D3ZEU6
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)
    Nucleotide Protein Strain
    Heading Accession and Version

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