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    SH3D19 SH3 domain containing 19 [ Homo sapiens (human) ]

    Gene ID: 152503, updated on 9-Dec-2024

    Summary

    Official Symbol
    SH3D19provided by HGNC
    Official Full Name
    SH3 domain containing 19provided by HGNC
    Primary source
    HGNC:HGNC:30418
    See related
    Ensembl:ENSG00000109686 MIM:608674; AllianceGenome:HGNC:30418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EBP; EVE1; Kryn; Eve-1; SH3P19
    Summary
    This gene encodes a multiple SH3 domain-containing protein, which interacts with other proteins, such as EBP and members of ADAM family, via the SH3 domains. This protein may be involved in suppression of Ras-induced cellular transformation and Ras-mediated activation of ELK1 by EBP, and regulation of ADAM proteins in the signaling of EGFR-ligand shedding. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
    Expression
    Ubiquitous expression in fat (RPKM 43.0), gall bladder (RPKM 40.6) and 23 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SH3D19 in Genome Data Viewer
    Location:
    4q31.3
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151120281..151325605, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (154444161..154649516, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (152041433..152246757, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986196 Neighboring gene Sharpr-MPRA regulatory region 3738 Neighboring gene small nucleolar RNA, C/D box U73B Neighboring gene small nucleolar RNA, C/D box 73A Neighboring gene ribosomal protein S3A Neighboring gene uncharacterized LOC105377485 Neighboring gene uncharacterized LOC124900799 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:152236121-152237320 Neighboring gene RNA, U6 small nuclear 1282, pseudogene Neighboring gene serine protease 48 Neighboring gene Sharpr-MPRA regulatory region 2958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:152312507-152313010 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr4:152328899-152329598 and GRCh37_chr4:152329599-152330298 Neighboring gene FHIP1A divergent transcript Neighboring gene FHF complex subunit HOOK interacting protein 1A Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:152405062-152405718 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:152405719-152406374 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:152406474-152407173 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:152407174-152407872 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:152409975-152410608 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152445639-152446203 Neighboring gene RN7SK pseudogene 35

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC105136, MGC118910, MGC118911, MGC118912, MGC118913

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables proline-rich region binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    SH3 domain-containing protein 19
    Names
    ADAM-binding protein Eve-1
    EEN-binding protein
    SH3 domain protein D19

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029721.2 RefSeqGene

      Range
      5000..210324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001009555.4NP_001009555.3  SH3 domain-containing protein 19 isoform 1

      See identical proteins and their annotated locations for NP_001009555.3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1, also known as Eve-1a).
      Source sequence(s)
      AC095055, AW263019, BC032404, BM670337, BM831166, BX647422, CD675494, DB277036, DB278138
      Consensus CDS
      CCDS34077.2
      UniProtKB/Swiss-Prot
      B7Z296, Q08EK1, Q32N10, Q5HYK7, Q5U3B8, Q86XB3, Q8N5E7, Q9UFC8
      Conserved Domains (6) summary
      cd11814
      Location:419468
      SH3_Eve1_1; First Src homology 3 domain of ADAM-binding protein Eve-1
      cd11815
      Location:499550
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:575625
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:665714
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:734783
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
    2. NM_001128923.2NP_001122395.1  SH3 domain-containing protein 19 isoform 2

      See identical proteins and their annotated locations for NP_001122395.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (2, also known as Eve-1b) missing an internal protein segment compared to isoform 1. Variants 2 and 4 encode the same isoform.
      Source sequence(s)
      AC095055, AW263019, BC032404, BM670337, BM831166, CD675494, DB277036
      Consensus CDS
      CCDS47144.1
      UniProtKB/Swiss-Prot
      Q5HYK7
      Related
      ENSP00000387030.4, ENST00000409598.8
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily
    3. NM_001128924.2NP_001122396.1  SH3 domain-containing protein 19 isoform 3

      See identical proteins and their annotated locations for NP_001122396.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an in-frame coding exon in the 5' region compared to variant 1. This results in a shorter isoform (3) missing an internal protein segment compared to isoform 1.
      Source sequence(s)
      AW263019, BC032404, BC108893, BM670337, BM831166, CD675494
      Consensus CDS
      CCDS47143.1
      UniProtKB/Swiss-Prot
      Q5HYK7
      Related
      ENSP00000415694.1, ENST00000427414.2
      Conserved Domains (5) summary
      cd11815
      Location:440491
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:516566
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:606655
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:675724
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      cl17036
      Location:379409
      SH3; Src Homology 3 domain superfamily
    4. NM_001243349.2NP_001230278.1  SH3 domain-containing protein 19 isoform 2

      See identical proteins and their annotated locations for NP_001230278.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) contains an alternate 5' terminal non-coding exon, and lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (2, also known as Eve-1b) missing an internal protein segment compared to isoform 1. Variants 2 and 4 encode the same isoform.
      Source sequence(s)
      AK294476, BC045742, BF109395, CF541231
      Consensus CDS
      CCDS47144.1
      UniProtKB/Swiss-Prot
      Q5HYK7
      Related
      ENSP00000423449.1, ENST00000514152.5
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily
    5. NM_001378121.1NP_001365050.1  SH3 domain-containing protein 19 isoform 4

      Status: REVIEWED

      Source sequence(s)
      AC095055, AC104819
      Conserved Domains (6) summary
      cd11814
      Location:699748
      SH3_Eve1_1; First Src homology 3 domain of ADAM-binding protein Eve-1
      cd11815
      Location:779830
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:855905
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:945994
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:10141063
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:168649
      PHA03247; large tegument protein UL36; Provisional
    6. NM_001378122.1NP_001365051.1  SH3 domain-containing protein 19 isoform 5

      Status: REVIEWED

      Source sequence(s)
      AC095055, AC104819
      Consensus CDS
      CCDS93652.1
      UniProtKB/TrEMBL
      A0A0U1RQE4
      Related
      ENSP00000488951.1, ENST00000604030.7
    7. NM_001378123.1NP_001365052.1  SH3 domain-containing protein 19 isoform 6

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Consensus CDS
      CCDS93651.1
      UniProtKB/TrEMBL
      A0A494C1M0
      Related
      ENSP00000499127.1, ENST00000652233.1
      Conserved Domains (6) summary
      cd11814
      Location:640689
      SH3_Eve1_1; First Src homology 3 domain of ADAM-binding protein Eve-1
      cd11815
      Location:720771
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:796846
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:886935
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:9551004
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:109590
      PHA03247; large tegument protein UL36; Provisional
    8. NM_001378124.1NP_001365053.1  SH3 domain-containing protein 19 isoform 7

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Conserved Domains (6) summary
      cd11815
      Location:697748
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:773823
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:863912
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:932981
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:109590
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:636666
      SH3; Src Homology 3 domain superfamily
    9. NM_001378126.1NP_001365055.1  SH3 domain-containing protein 19 isoform 1

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Consensus CDS
      CCDS34077.2
      UniProtKB/Swiss-Prot
      B7Z296, Q08EK1, Q32N10, Q5HYK7, Q5U3B8, Q86XB3, Q8N5E7, Q9UFC8
      Related
      ENSP00000386848.2, ENST00000409252.6
      Conserved Domains (6) summary
      cd11814
      Location:419468
      SH3_Eve1_1; First Src homology 3 domain of ADAM-binding protein Eve-1
      cd11815
      Location:499550
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:575625
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:665714
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:734783
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
    10. NM_001378127.1NP_001365056.1  SH3 domain-containing protein 19 isoform 1

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Consensus CDS
      CCDS34077.2
      UniProtKB/Swiss-Prot
      B7Z296, Q08EK1, Q32N10, Q5HYK7, Q5U3B8, Q86XB3, Q8N5E7, Q9UFC8
      Conserved Domains (6) summary
      cd11814
      Location:419468
      SH3_Eve1_1; First Src homology 3 domain of ADAM-binding protein Eve-1
      cd11815
      Location:499550
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:575625
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:665714
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:734783
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
    11. NM_001378128.1NP_001365057.1  SH3 domain-containing protein 19 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC095055, AC104819
      Consensus CDS
      CCDS47144.1
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily
    12. NM_001378129.1NP_001365058.1  SH3 domain-containing protein 19 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Consensus CDS
      CCDS47144.1
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily
    13. NM_001378130.1NP_001365059.1  SH3 domain-containing protein 19 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC095055
      Consensus CDS
      CCDS47144.1
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily
    14. NM_001378131.1NP_001365060.1  SH3 domain-containing protein 19 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC095055, AC104819
      Consensus CDS
      CCDS47144.1
      Conserved Domains (6) summary
      cd11815
      Location:476527
      SH3_Eve1_2; Second Src homology 3 domain of ADAM-binding protein Eve-1
      cd11816
      Location:552602
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:642691
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cd11818
      Location:711760
      SH3_Eve1_5; Fifth Src homology 3 domain of ADAM-binding protein Eve-1
      PHA03247
      Location:29369
      PHA03247; large tegument protein UL36; Provisional
      cl17036
      Location:415445
      SH3; Src Homology 3 domain superfamily

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      151120281..151325605 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791772.1 Reference GRCh38.p14 PATCHES

      Range
      57012..262336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      154444161..154649516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)