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    CG13088 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34180, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13088provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032047
    Locus tag
    Dmel_CG13088
    See related
    AllianceGenome:FB:FBgn0032047
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13088; FBXO15
    Summary
    Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13088 in Genome Data Viewer
    Location:
    29D1-29D1; 2-33 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8488981..8490546)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8488981..8490546)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene dachs Neighboring gene long non-coding RNA:CR43604 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Diuretic hormone 31 Neighboring gene beta-site APP-cleaving enzyme

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Understanding functional miRNA-target interactions in vivo by site-specific genome engineering. Bassett AR, et al. Nat Commun, 2014 Aug 19. PMID 25135198, Free PMC Article
    2. Identification of SUMO-dependent chromatin-associated transcriptional repression components by a genome-wide RNAi screen. Stielow B, et al. Mol Cell, 2008 Mar 28. PMID 18374648
    3. SCF-Fbxo42 promotes synaptonemal complex assembly by downregulating PP2A-B56. Barbosa P, et al. J Cell Biol, 2021 Feb 1. PMID 33382409, Free PMC Article
    4. Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets. Hong X, et al. Proc Natl Acad Sci U S A, 2009 Sep 1. PMID 19706460, Free PMC Article
    5. A systematic phenotypic screen of F-box genes through a tissue-specific RNAi-based approach in Drosophila. Dui W, et al. J Genet Genomics, 2012 Aug 20. PMID 22884096

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ISM
    Inferred from Sequence Model
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex ISM
    Inferred from Sequence Model
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13088-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      8488981..8490546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135390.4 → NP_609234.2  uncharacterized protein Dmel_CG13088 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609234.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H5V8C8, Q8T4E7, Q9VLK5
      Related
      FBpp0079293
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T4E7 Q8T4E7

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