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    b6 b6 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31124, updated on 9-Dec-2024

    Summary

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    Official Symbol
    b6provided by FlyBase
    Official Full Name
    b6provided by FlyBase
    Primary source
    FLYBASE:FBgn0024897
    Locus tag
    Dmel_CG3100
    See related
    AllianceGenome:FB:FBgn0024897
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    B6; CG3100; Dmel\CG3100; EG:9D2.1
    Summary
    Predicted to be located in glutamatergic synapse. Is expressed in adult fat body. Orthologous to human NPTX2 (neuronal pentraxin 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    Location:
    2B7-2B7; 1-0.2 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1686624..1690187)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1580657..1584220)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene halfway Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene a6 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Comparison of the molecular and genetic map of the 2B6-2B7-8 of Drosophila melanogaster X-chromosome]. Makunin IV, et al. Genetika, 1999 Aug. PMID 10546111
    2. From sequence to chromosome: the tip of the X chromosome of D. melanogaster. Benos PV, et al. Science, 2000 Mar 24. PMID 10731137
    3. Molecular characterization of the singed wings locus of Drosophila melanogaster. Schwartz YB, et al. BMC Genet, 2004 Jun 9. PMID 15189568, Free PMC Article
    4. Meaningless minis? Mechanisms of neurotransmitter-receptor clustering. Verstreken P, et al. Trends Neurosci, 2002 Aug. PMID 12127745
    5. Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila. Boomgarden AC, et al. BMC Genomics, 2019 Jan 7. PMID 30616504, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in glutamatergic synapse ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    b6
    Names
    CG3100-PA
    b6-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1686624..1690187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058017.5 → NP_477365.1  b6 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_477365.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O76933, Q8MZ27, Q9V3N9
      Related
      FBpp0070262
      Conserved Domains (1) summary
      cl22861
      Location:134 → 264
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O76933 O76933
    Q8MZ27 Q8MZ27
    Q9V3N9 Q9V3N9

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