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    AGP30 arabinogalactan protein 30 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817946, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP30
    Official Full Name
    arabinogalactan protein 30
    Primary source
    TAIR:AT2G33790
    Locus tag
    AT2G33790
    See related
    Araport:AT2G33790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 30; ATAGP30; T1B8.9; T1B8_9
    Summary
    pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family
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    Genomic context

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    See AGP30 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (14293561..14295353, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene VQ motif-containing protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA ligase-like protein Neighboring gene FBD-like domain family protein Neighboring gene Ribosomal protein S5 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtAGP30, an arabinogalactan-protein in the cell walls of the primary root, plays a role in root regeneration and seed germination. van Hengel AJ, et al. Plant J, 2003 Oct. PMID 14535889
    2. AGP30: Cd tolerance related gene associate with mitochondrial pyruvate carrier 1. Jing Y, et al. Plant Signal Behav, 2019. PMID 31198086, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AGP30, which specifically expresses in root and is significantly regulated by MPC under Cadmium stress.
      Title: AGP30: Cd tolerance related gene associate with mitochondrial pyruvate carrier 1.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128938.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 30
    NP_180935.1
    • arabinogalactan protein 30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 4773 Blast hits to 1945 proteins in 284 species: Archae - 10; Bacteria - 247; Metazoa - 746; Fungi - 274; Plants - 1194; Viruses - 386; Other Eukaryotes - 1916 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14293561..14295353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128938.3 → NP_180935.1  arabinogalactan protein 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180935.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93013
      UniProtKB/TrEMBL
      A0A178VV62, A0A5S9X3N7, A0A654F009
      Conserved Domains (1) summary
      pfam01190
      Location:112 → 197
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93013.1

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