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    PLATZ transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843992, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLATZ transcription factor family protein
    Primary source
    TAIR:AT1G76590
    Locus tag
    AT1G76590
    See related
    Araport:AT1G76590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14G6.19; F14G6_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (28740540..28742231)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein Neighboring gene ncRNA Neighboring gene poly polymerase Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106309.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLATZ transcription factor family protein
    NP_565135.1
    • PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G21000.1); Has 404 Blast hits to 404 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28740540..28742231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106309.3 → NP_565135.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565135.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMM6, A0A5S9WV05, Q2HIW3
      Conserved Domains (2) summary
      cd19756
      Location:33 → 72
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      pfam04640
      Location:73 → 144
      PLATZ; PLATZ transcription factor
    Nucleotide Protein
    Heading Accession and Version

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