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    Polynucleotide adenylyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839702, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polynucleotide adenylyltransferase family protein
    Primary source
    TAIR:AT1G28090
    Locus tag
    AT1G28090
    See related
    Araport:AT1G28090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K9.19; F13K9_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (9795718..9799116)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING finger protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084144.1
    NM_001332799.1
    NM_001332800.1
    NM_102574.4
    NM_202195.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polynucleotide adenylyltransferase family protein
    NP_001077613.1
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9376 Blast hits to 9368 proteins in 2610 species: Archae - 2; Bacteria - 6608; Metazoa - 130; Fungi - 222; Plants - 128; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink).
    NP_174130.2
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink).
    NP_973924.1
    • Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9795718..9799116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102574.4 → NP_174130.2  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174130.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W431, F4HUW0
      Conserved Domains (1) summary
      COG0617
      Location:91 → 398
      PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

    2. NM_202195.3 → NP_973924.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973924.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4S3, B4F7Q8, Q9C7E4
      Conserved Domains (1) summary
      TIGR01942
      Location:51 → 350
      pcnB; poly(A) polymerase

    3. NM_001332799.1 → NP_001322265.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATH4, Q9C7E4

    4. NM_001332800.1 → NP_001322264.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATK0

    5. NM_001084144.1 → NP_001077613.1  Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077613.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQQ4, Q9C7E4
      Conserved Domains (2) summary
      cd05398
      Location:41 → 175
      NT_ClassII-CCAase; Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes
      pfam12627
      Location:206 → 269
      PolyA_pol_RNAbd; Probable RNA and SrmB- binding site of polymerase A
    Nucleotide Protein
    Heading Accession and Version

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