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    SMAD/FHA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821210, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SMAD/FHA domain-containing protein
    Primary source
    TAIR:AT3G02400
    Locus tag
    AT3G02400
    See related
    Araport:AT3G02400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16B3.3; F16B3_3
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (489670..491927)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-splicing endonuclease subunit Neighboring gene CONSTANS-like 2 Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene dihydroflavonol 4-reductase/flavanone protein Neighboring gene transmembrane protein, putative (DUF679)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Forkhead-Associated Domain Protein 3 negatively regulates peroxisome division. Desai M, et al. J Integr Plant Biol, 2017 Jul. PMID 28332291
    2. Molecular convergence by differential domain acquisition is a hallmark of chromosomal passenger complex evolution. Komaki S, et al. Proc Natl Acad Sci U S A, 2022 Oct 18. PMID 36227914, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111107.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within peroxisome fission IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromosome passenger complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SMAD/FHA domain-containing protein
    NP_186889.1
    • SMAD/FHA domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT4G14490.1); Has 35808 Blast hits to 23469 proteins in 1463 species: Archae - 220; Bacteria - 3517; Metazoa - 15859; Fungi - 2964; Plants - 1604; Viruses - 219; Other Eukaryotes - 11425 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      489670..491927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337404.1 → NP_001325491.1  SMAD/FHA domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLE3, Q9FWA0

    2. NM_111107.2 → NP_186889.1  SMAD/FHA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186889.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VC62, A0A384L750, Q9FWA0, Q9M8A0
      Conserved Domains (1) summary
      cd00060
      Location:5 → 106
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    Nucleotide Protein
    Heading Accession and Version

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