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    emb2742 CTP synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820447, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb2742
    Official Full Name
    CTP synthase family protein
    Primary source
    TAIR:AT3G12670
    Locus tag
    AT3G12670
    See related
    Araport:AT3G12670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 2742
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    Genomic context

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    See emb2742 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Sequence:
    Chromosome: 3; NC_003074.8 (4019031..4024357, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene FASCICLIN-like arabinogalactan protein 14 precursor Neighboring gene floral homeotic protein (HUA1) Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CTP Synthase 2 From Arabidopsis thaliana Is Required for Complete Embryo Development. Hickl D, et al. Front Plant Sci, 2021. PMID 33936137, Free PMC Article
    2. Characterization of filament-forming CTP synthases from Arabidopsis thaliana. Daumann M, et al. Plant J, 2018 Oct. PMID 30030857, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112102.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables CTP synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in 'de novo' CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in response to auxin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CTP synthase family protein
    NP_187873.1
    • embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10841 Blast hits to 10805 proteins in 2914 species: Archae - 237; Bacteria - 5484; Metazoa - 258; Fungi - 230; Plants - 171; Viruses - 0; Other Eukaryotes - 4461 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4019031..4024357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112102.3 → NP_187873.1  CTP synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187873.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDI5, A0A384K8P2, A0A7G2EK31, Q9LTW8
      Conserved Domains (1) summary
      PLN02327
      Location:1 → 555
      PLN02327; CTP synthase
    Nucleotide Protein
    Heading Accession and Version

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