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    DnaJ (DUF3353) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824278, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DnaJ (DUF3353)
    Primary source
    TAIR:AT3G51140
    Locus tag
    AT3G51140
    See related
    Araport:AT3G51140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18997600..18999904)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 44 Neighboring gene uncharacterized protein Neighboring gene tRNA-Glu Neighboring gene ATP binding microtubule motor family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chaperone-like protein DAY plays critical roles in photomorphogenesis. Lee HS, et al. Nat Commun, 2021 Jul 7. PMID 34234144, Free PMC Article
    2. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Chaperone-like protein DAY plays critical roles in photomorphogenesis.
      Title: Chaperone-like protein DAY plays critical roles in photomorphogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001339491.1
    NM_114974.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane HDA PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    DnaJ (DUF3353)
    NP_566946.1
    • Protein of unknown function (DUF3353); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3353 (InterPro:IPR021788); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3353) (TAIR:AT5G23040.1); Has 193 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18997600..18999904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114974.4 → NP_566946.1  DnaJ (DUF3353) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566946.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJN6, A0A7G2EQF3, Q94C78
      Conserved Domains (1) summary
      pfam11833
      Location:101 → 277
      CPP1-like; Protein CHAPERONE-LIKE PROTEIN OF POR1-like

    2. NM_001339491.1 → NP_001327200.1  DnaJ (DUF3353) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJN6, A0A1I9LRK5
    Nucleotide Protein
    Heading Accession and Version

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