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    TBL3 trichome birefringence-like protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830298, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL3
    Official Full Name
    trichome birefringence-like protein (DUF828)
    Primary source
    TAIR:AT5G01360
    Locus tag
    AT5G01360
    See related
    Araport:AT5G01360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10O8.70; T10O8_70; TRICHOME BIREFRINGENCE-LIKE 3
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (147416..149495, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UvrABC system C protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene ALC-interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Yuan Y, et al. Plant Cell Physiol, 2016 Jan. PMID 26556650
    2. Involvement of TBL/DUF231 proteins into cell wall biology. Bischoff V, et al. Plant Signal Behav, 2010 Aug. PMID 20657172, Free PMC Article
    3. TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis. Bischoff V, et al. Plant Physiol, 2010 Jun. PMID 20388664, Free PMC Article
    4. An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. Oikawa A, et al. PLoS One, 2010 Nov 23. PMID 21124849, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings indicate that TBL3 and TBL31 are secondary wall-associated DUF231 genes specifically involved in xylan 3-O-acetylation.
      Title: TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    2. Loss of TBR or TBL3 results in increased pectin methylesterase activity and reduced pectin esterification in etiolated Arabidopsis hypocotyls.
      Title: Involvement of TBL/DUF231 proteins into cell wall biology.
    3. TBR and TBL3 are plant-specific DUF231 proteins. Mutation causes lower levels of crystalline cellulose and have altered pectin composition in trichomes and stems.
      Title: TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001342585.1
    NM_120214.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables xylan O-acetyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellulose biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylan biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trichome birefringence-like protein (DUF828)
    NP_001318450.1
    • TRICHOME BIREFRINGENCE-LIKE 3 (TBL3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1290 Blast hits to 1278 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_568089.1
    • TRICHOME BIREFRINGENCE-LIKE 3 (TBL3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      147416..149495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120214.4 → NP_568089.1  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568089.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH72, F4K9C5, Q0WSF4, Q8LED3, Q9M036
      UniProtKB/TrEMBL
      A0A7G2F9K4
      Conserved Domains (2) summary
      pfam13839
      Location:145 → 433
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:90 → 143
      PMR5N; PMR5 N terminal Domain

    2. NM_001342585.1 → NP_001318450.1  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI94, A0A2H1ZE45
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LED3.1

    Gene LinkOut

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