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    transmembrane protein, putative (DUF3464) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835355, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF3464)
    Primary source
    TAIR:AT5G52780
    Locus tag
    AT5G52780
    See related
    Araport:AT5G52780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N7.27; F6N7_27
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21390412..21391561, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Copper transport protein family Neighboring gene Copper transport protein family Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Armbruster U, et al. Plant Cell, 2013 Oct. PMID 24096342, Free PMC Article
    2. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the integral thylakoid protein PAM68L acts as an auxiliary factor in the assembly of the chloroplast NAD(P)H dehydrogenase complex
      Title: The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_124656.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within NADH dehydrogenase complex (plastoquinone) assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF3464)
    NP_200090.1
    • Protein of unknown function (DUF3464); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3464 (InterPro:IPR021855); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3464) (TAIR:AT4G19100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21390412..21391561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124656.3 → NP_200090.1  transmembrane protein, putative (DUF3464) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200090.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTD9
      UniProtKB/TrEMBL
      A0A178UE33, A0A5S9YEK9
      Conserved Domains (1) summary
      pfam11947
      Location:74 → 166
      DUF3464; Protein of unknown function (DUF3464)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTD9.1

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