YLS8 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: YLS8
Official Full Name: mRNA splicing factor, thioredoxin-like U5 snRNP
Primary source: TAIR:AT5G08290
Locus tag: AT5G08290
See related: Araport:AT5G08290
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: YELLOW-LEAF-SPECIFIC GENE 8
Summary: Encodes Dim1 homolog.
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Genomic context

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See YLS8 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 2

Sequence:: Chromosome: 5; NC_003076.8 (2665899..2667261)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001342993.1

Supported by ESTs:

NM_120912.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U4/U6 x U5 tri-snRNP complex	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	HDA more info	PubMed
located_in nucleus	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: mRNA splicing factor, thioredoxin-like U5 snRNP

NP_196446.1

YELLOW-LEAF-SPECIFIC GENE 8 (YLS8); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR:AT3G24730.1); Has 564 Blast hits to 564 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

2665899..2667261

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120912.3 → NP_196446.1 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_196446.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LF46, Q9FE62

UniProtKB/TrEMBL

A0A178UL96, A0A5S9Y2T7

Conserved Domains (1) summary

PLN00410
Location:1 → 142

PLN00410; U5 snRNP protein, DIM1 family; Provisional
NM_001342993.1 → NP_001331247.1 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BDD3

Conserved Domains (1) summary

cl00388
Location:1 → 102

Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold