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    Spata46 spermatogenesis associated 46 [ Mus musculus (house mouse) ]

    Gene ID: 76925, updated on 27-Nov-2024

    Summary

    Official Symbol
    Spata46provided by MGI
    Official Full Name
    spermatogenesis associated 46provided by MGI
    Primary source
    MGI:MGI:1924175
    See related
    Ensembl:ENSMUSG00000042800 AllianceGenome:MGI:1924175
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700015E13Rik
    Summary
    Involved in fusion of sperm to egg plasma membrane involved in single fertilization and spermatogenesis. Located in nuclear membrane. Orthologous to human SPATA46 (spermatogenesis associated 46). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 305.5) See more
    Orthologs
    NEW
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    Genomic context

    See Spata46 in Genome Data Viewer
    Location:
    1 H3; 1 76.84 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (170136388..170139694)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (170308819..170312125)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 1B1 Neighboring gene predicted gene 7694 Neighboring gene nitric oxide synthase 1 (neuronal) adaptor protein Neighboring gene STARR-seq mESC enhancer starr_02991 Neighboring gene STARR-seq mESC enhancer starr_02992 Neighboring gene STARR-seq mESC enhancer starr_02993 Neighboring gene predicted gene, 46171 Neighboring gene ribosomal protein L17 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    General gene information

    Markers

    Clone Names

    • MGC118338

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in fertilization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in fusion of sperm to egg plasma membrane involved in single fertilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nuclear membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear membrane IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    spermatogenesis-associated protein 46
    Names
    uncharacterized protein C1orf111 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039593.2NP_001034682.1  spermatogenesis-associated protein 46

      See identical proteins and their annotated locations for NP_001034682.1

      Status: VALIDATED

      Source sequence(s)
      AC119431
      Consensus CDS
      CCDS15471.1
      UniProtKB/Swiss-Prot
      Q4FZF2
      Related
      ENSMUSP00000062245.6, ENSMUST00000056991.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      170136388..170139694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)