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    1700001K19Rik RIKEN cDNA 1700001K19 gene [ Mus musculus (house mouse) ]

    Gene ID: 66323, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700001K19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700001K19 geneprovided by MGI
    Primary source
    MGI:MGI:1913573
    See related
    Ensembl:ENSMUSG00000056508 AllianceGenome:MGI:1913573
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 131.7) See more
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    Genomic context

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    See 1700001K19Rik in Genome Data Viewer
    Location:
    12 F1; 12 60.74 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110634122..110649086, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110667688..110682662, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B930059L03 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829680-111829789 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829792-111829979 Neighboring gene predicted gene, 35558 Neighboring gene dynein cytoplasmic 1 heavy chain 1 Neighboring gene STARR-seq mESC enhancer starr_33294 Neighboring gene predicted gene, 53768 Neighboring gene STARR-positive B cell enhancer mm9_chr12:111934512-111934812 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC58197

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC66323

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025488.2 → NP_079764.2  uncharacterized protein LOC66323

      See identical proteins and their annotated locations for NP_079764.2

      Status: VALIDATED

      Source sequence(s)
      AK005606, AK006098
      Consensus CDS
      CCDS49175.1
      UniProtKB/TrEMBL
      Q80ZT1
      Related
      ENSMUSP00000068238.6, ENSMUST00000070659.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      110634122..110649086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246852.2 → XP_030102712.1  uncharacterized protein LOC66323 isoform X4

      UniProtKB/TrEMBL
      Q80ZT1

    2. XM_006516149.5 → XP_006516212.1  uncharacterized protein LOC66323 isoform X3

      See identical proteins and their annotated locations for XP_006516212.1

    3. XM_030246851.2 → XP_030102711.1  uncharacterized protein LOC66323 isoform X2

    4. XM_006516148.5 → XP_006516211.1  uncharacterized protein LOC66323 isoform X3

      See identical proteins and their annotated locations for XP_006516211.1

    5. XM_006516147.4 → XP_006516210.1  uncharacterized protein LOC66323 isoform X2

    6. XM_036157559.1 → XP_036013452.1  uncharacterized protein LOC66323 isoform X4

      UniProtKB/TrEMBL
      Q80ZT1

    7. XM_030246854.1 → XP_030102714.1  uncharacterized protein LOC66323 isoform X4

      UniProtKB/TrEMBL
      Q80ZT1

    8. XM_036157558.1 → XP_036013451.1  uncharacterized protein LOC66323 isoform X2

    9. XM_011244159.4 → XP_011242461.1  uncharacterized protein LOC66323 isoform X1

      See identical proteins and their annotated locations for XP_011242461.1

    10. XM_006516144.5 → XP_006516207.1  uncharacterized protein LOC66323 isoform X1

      See identical proteins and their annotated locations for XP_006516207.1

    11. XM_006516145.5 → XP_006516208.1  uncharacterized protein LOC66323 isoform X1

      See identical proteins and their annotated locations for XP_006516208.1

    Nucleotide Protein Strain
    Heading Accession and Version

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