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    Sel1 repeat protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818426, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sel1 repeat protein
    Primary source
    TAIR:AT2G38450
    Locus tag
    AT2G38450
    See related
    Araport:AT2G38450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19C21.6; T19C21_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16101926..16102998)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene SCAR homolog 2 Neighboring gene iron regulated 1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129401.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sel1 repeat protein
    NP_565889.2
    • CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16101926..16102998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336698.1 → NP_001324615.1  Sel1 repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0M8

    2. NM_129401.3 → NP_565889.2  Sel1 repeat protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565889.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X541, F4ISY9
      Conserved Domains (3) summary
      smart00671
      Location:84 → 111
      SEL1; Sel1-like repeats
      COG0790
      Location:65 → 113
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:65 → 93
      SLR; SLR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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