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    MEE29 helicase domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818101, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEE29
    Official Full Name
    helicase domain-containing protein
    Primary source
    TAIR:AT2G35340
    Locus tag
    AT2G35340
    See related
    Araport:AT2G35340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    maternal effect embryo arrest 29; T32F12.28; T32F12_28
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    Genomic context

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    See MEE29 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    28
    Sequence:
    Chromosome: 2; NC_003071.7 (14872265..14879739)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Transcriptional factor B3 family protein Neighboring gene eyes absent-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336552.1
    NM_129086.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    helicase domain-containing protein
    NP_181077.3
    • maternal effect embryo arrest 29 (MEE29); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.1); Has 27494 Blast hits to 21402 proteins in 1991 species: Archae - 43; Bacteria - 4684; Metazoa - 8996; Fungi - 2538; Plants - 1485; Viruses - 1677; Other Eukaryotes - 8071 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14872265..14879739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129086.4 → NP_181077.3  helicase domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181077.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IJV4, O82303, Q0WVI8
      UniProtKB/TrEMBL
      A0A654EZ31
      Conserved Domains (5) summary
      smart00487
      Location:399 → 574
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:802 → 887
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:421 → 559
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:597 → 732
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:911 → 1021
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    2. NM_001336552.1 → NP_001323587.1  helicase domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXH4, A0A7G2EEJ3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IJV4.1

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