U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    LOC102546299 uncharacterized LOC102546299 [ Homo sapiens (human) ]

    Gene ID: 102546299, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC102546299
    Gene description
    uncharacterized LOC102546299
    See related
    Ensembl:ENSG00000241956
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC102546299 in Genome Data Viewer
    Location:
    5q34
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (164470279..164542984)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (165005187..165077861)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (163897285..163969990)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:163319797-163320352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23583 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:163342579-163343125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16592 Neighboring gene LSM1 homolog, mRNA degradation associated pseudogene 2 Neighboring gene MPRA-validated peak5565 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:163546314-163547513 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:163559545-163559889 Neighboring gene NANOG hESC enhancer GRCh37_chr5:163611210-163611711 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:163616370-163616914 Neighboring gene MPRA-validated peak5567 silencer Neighboring gene MPRA-validated peak5568 silencer Neighboring gene long intergenic non-protein coding RNA 3000 Neighboring gene long intergenic non-protein coding RNA 2143 Neighboring gene ribosomal protein S15 pseudogene 6 Neighboring gene RNA, U6 small nuclear 209, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_105065.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091974, AC122698
      Related
      ENST00000767698.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      164470279..164542984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      165005187..165077861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.