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    Papain family cysteine protease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839783, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Papain family cysteine protease
    Primary source
    TAIR:AT1G29080
    Locus tag
    AT1G29080
    See related
    Araport:AT1G29080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28N24.27; F28N24_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (10157494..10158805, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Heavy metal transport/detoxification superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Papain family cysteine protease
    NP_564320.1
    • Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G29090.1); Has 7819 Blast hits to 7758 proteins in 724 species: Archae - 63; Bacteria - 249; Metazoa - 3289; Fungi - 4; Plants - 1890; Viruses - 133; Other Eukaryotes - 2191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10157494..10158805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102649.2 → NP_564320.1  Papain family cysteine protease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564320.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9W911, A0A654EDP3, Q9LP39
      Conserved Domains (3) summary
      PTZ00203
      Location:4 → 328
      PTZ00203; cathepsin L protease; Provisional
      smart00848
      Location:39 → 95
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:135 → 345
      Peptidase_C1; Papain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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