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    VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844177, updated on 18-Sep-2024

    Summary

    Official Full Name
    VQ motif-containing protein
    Primary source
    TAIR:AT1G78410
    Locus tag
    AT1G78410
    See related
    Araport:AT1G78410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3F9.8; F3F9_8
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (29502506..29503938)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nine-cis-epoxycarotenoid dioxygenase 9 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene ROP interactive partner 2

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001334826.1
    NM_106488.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    VQ motif-containing protein
    NP_565179.1
    • VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G17147.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29502506..29503938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106488.3NP_565179.1  VQ motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565179.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PXT0, Q8VYI5, Q9M9F7
      UniProtKB/TrEMBL
      A0A178WJ54, A0A5S9WVG2
      Conserved Domains (1) summary
      pfam05678
      Location:1641
      VQ; VQ motif
    2. NM_001334826.1NP_001321086.1  VQ motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PXT0, Q8VYI5, Q9M9F7
      UniProtKB/TrEMBL
      A0A178WJ54, A0A5S9WVG2
      Conserved Domains (1) summary
      pfam05678
      Location:1641
      VQ; VQ motif