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    TBL18 TRICHOME BIREFRINGENCE-LIKE 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828639, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL18
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 18
    Primary source
    TAIR:AT4G25360
    Locus tag
    AT4G25360
    See related
    Araport:AT4G25360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30C3.30; T30C3_30; TRICHOME BIREFRINGENCE-LIKE 18
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL18 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (12969559..12972666)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FK506 BINDING PROTEIN 53 Neighboring gene EXS (ERD1/XPR1/SYG1) family protein Neighboring gene Double Clp-N motif protein Neighboring gene stress-associated protein 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036635.1
    NM_118668.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables O-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 18
    NP_001031712.1
    • TRICHOME BIREFRINGENCE-LIKE 18; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_194266.2
    • TRICHOME BIREFRINGENCE-LIKE 18 (TBL18); INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 1342 Blast hits to 1320 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1339; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12969559..12972666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118668.5 → NP_194266.2  TRICHOME BIREFRINGENCE-LIKE 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194266.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYS5, Q9STK1
      UniProtKB/TrEMBL
      A0A178V5X6, A0A654FSV2, A0AAF0Y467
      Conserved Domains (2) summary
      pfam13839
      Location:227 → 523
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:173 → 226
      PMR5N; PMR5 N terminal Domain

    2. NM_001036635.1 → NP_001031712.1  TRICHOME BIREFRINGENCE-LIKE 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031712.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYS5, Q9STK1
      UniProtKB/TrEMBL
      A0A178V5X6, A0A654FSV2, A0AAF0Y467
      Conserved Domains (2) summary
      pfam13839
      Location:227 → 523
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:173 → 226
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYS5.1

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