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    GDI GDP dissociation inhibitor family protein / Rab GTPase activator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830814, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GDI
    Official Full Name
    GDP dissociation inhibitor family protein / Rab GTPase activator family protein
    Primary source
    TAIR:AT5G09550
    Locus tag
    AT5G09550
    See related
    Araport:AT5G09550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I14.260; F17I14_260; RAB GDP-dissociation inhibitor
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    Genomic context

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    See GDI in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (2963648..2966811)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Cox19-like CHCH family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Ge W, et al. Biochim Biophys Acta, 2011 Dec. PMID 21798377, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120992.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rab GDP-dissociation inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in small GTPase-mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GDP dissociation inhibitor family protein / Rab GTPase activator family protein
    NP_196517.3
    • GDP dissociation inhibitor family protein / Rab GTPase activator family protein; FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1326 Blast hits to 1219 proteins in 259 species: Archae - 2; Bacteria - 4; Metazoa - 658; Fungi - 290; Plants - 182; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2963648..2966811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120992.5 → NP_196517.3  GDP dissociation inhibitor family protein / Rab GTPase activator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196517.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXC0
      UniProtKB/TrEMBL
      A0A178UJW0, A0A5S9Y3F1, A0A654G025
      Conserved Domains (1) summary
      cl21454
      Location:1 → 433
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXC0.1

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