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    glycoside hydrolase family 2 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837422, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycoside hydrolase family 2 protein
    Primary source
    TAIR:AT1G09010
    Locus tag
    AT1G09010
    See related
    Araport:AT1G09010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7G19.12; F7G19_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (2895166..2899446, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene plant glycogenin-like starch initiation protein 5 Neighboring gene NPK1-related protein kinase 1 Neighboring gene sucrose nonfermenting-like protein Neighboring gene nuclear factor Y, subunit B4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100772.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mannosylglycoprotein endo-beta-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    glycoside hydrolase family 2 protein
    NP_563833.2
    • glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18; Bacteria - 3983; Metazoa - 234; Fungi - 319; Plants - 43; Viruses - 2; Other Eukaryotes - 473 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2895166..2899446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100772.5 → NP_563833.2  glycoside hydrolase family 2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563833.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04029, Q75W54
      UniProtKB/TrEMBL
      A0A178WLW7, A0A5S9TCZ0
      Conserved Domains (3) summary
      cl30613
      Location:46 → 464
      LacZ; Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
      pfam17786
      Location:701 → 781
      Mannosidase_ig; Mannosidase Ig/CBM-like domain
      cl38983
      Location:853 → 935
      Ig_mannosidase; Ig-fold domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75W54.3

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