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    AVA-P2 ATPase, F0/V0 complex, subunit C protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838579, updated on 3-Dec-2024

    Summary

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    Official Symbol
    AVA-P2
    Official Full Name
    ATPase, F0/V0 complex, subunit C protein
    Primary source
    TAIR:AT1G19910
    Locus tag
    AT1G19910
    See related
    Araport:AT1G19910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVHA-C2; AVA-2PE; F6F9.3; F6F9_3; VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID; VACUOLAR-TYPE H+ ATPASE C2
    Summary
    vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)
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    Genomic context

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    See AVA-P2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6913001..6914634)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene male-gamete-specific histone H3 Neighboring gene glyoxal oxidase-related protein Neighboring gene Pseudouridine synthase/archaeosine transglycosylase-like family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene glycosyl hydrolase 9B5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Several distinct genes encode nearly identical to 16 kDa proteolipids of the vacuolar H(+)-ATPase from Arabidopsis thaliana. Perera IY, et al. Plant Mol Biol, 1995 Oct. PMID 7579175
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332418.1
    NM_101846.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of vacuolar proton-transporting V-type ATPase, V0 domain ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ATPase, F0/V0 complex, subunit C protein
    NP_564098.2
    • AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6913001..6914634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101846.4 → NP_564098.2  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564098.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59228, Q39037, Q39038, Q39039, Q42424, Q96298
      UniProtKB/TrEMBL
      A0A178W2T3, A0A384KIA7, Q24JM2
      Conserved Domains (2) summary
      TIGR01100
      Location:13 → 121
      V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
      cd18176
      Location:89 → 156
      ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins

    2. NM_001332418.1 → NP_001321379.1  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQP0
      Conserved Domains (1) summary
      TIGR01100
      Location:13 → 121
      V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P59228.1

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