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    cysteine-rich/transmembrane domain A-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817779, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cysteine-rich/transmembrane domain A-like protein
    Primary source
    TAIR:AT2G32200
    Locus tag
    AT2G32200
    See related
    Araport:AT2G32200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22D22.5; F22D22_5
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (13676389..13677306)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene plastid transcriptionally active 18 Neighboring gene cysteine-rich/transmembrane domain A-like protein Neighboring gene cysteine-rich/transmembrane domain A-like protein Neighboring gene Ribosomal L27e protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana. Xu Y, et al. Plant Cell Physiol, 2018 Feb 1. PMID 29272523
    2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128779.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich/transmembrane domain A-like protein
    NP_180779.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 131 Blast hits to 131 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13676389..13677306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336374.1 → NP_001323680.1  cysteine-rich/transmembrane domain A-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXU8
      Conserved Domains (1) summary
      pfam12734
      Location:60 → 107
      CYSTM; Cysteine-rich TM module stress tolerance

    2. NM_128779.4 → NP_180779.2  cysteine-rich/transmembrane domain A-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180779.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MER3, Q1PEX8, Q9SKY0
      UniProtKB/TrEMBL
      A0A178VV61, A0A7G2ECP4
      Conserved Domains (1) summary
      pfam12734
      Location:26 → 73
      CYSTM; Cysteine-rich TM module stress tolerance
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PEX8.1

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