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    LBD13 LOB domain-containing protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817584, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD13
    Official Full Name
    LOB domain-containing protein 13
    Primary source
    TAIR:AT2G30340
    Locus tag
    AT2G30340
    See related
    Araport:AT2G30340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOB domain-containing protein 13; T9D9.15; T9D9_15
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    Genomic context

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    See LBD13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12931172..12932828, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pseudouridine synthase family protein Neighboring gene GCN5L1 family protein Neighboring gene Excinuclease ABC, C subunit, N-terminal Neighboring gene ncRNA Neighboring gene SOS3-interacting protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LBD13 positively regulates lateral root formation in Arabidopsis. Cho C, et al. Planta, 2019 Apr. PMID 30627888
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. positively regulates lateral root formation
      Title: LBD13 positively regulates lateral root formation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001336251.1
    NM_179810.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 13
    NP_850141.1
    • LOB domain-containing protein 13 (LBD13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 15 (TAIR:AT2G40470.1); Has 7621 Blast hits to 4763 proteins in 393 species: Archae - 10; Bacteria - 557; Metazoa - 1967; Fungi - 731; Plants - 2819; Viruses - 582; Other Eukaryotes - 955 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12931172..12932828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179810.3 → NP_850141.1  LOB domain-containing protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850141.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG64, O22930, Q147P1, Q8W1D8, Q9AT61
      UniProtKB/TrEMBL
      A0A178VTE1
      Conserved Domains (1) summary
      pfam03195
      Location:52 → 149
      LOB; Lateral organ boundaries (LOB) domain

    2. NM_001336251.1 → NP_001323878.1  LOB domain-containing protein 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRU4, A0A1P8AYC6, A0A384LQ09
      Conserved Domains (1) summary
      pfam03195
      Location:53 → 150
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AT61.2

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