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    Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841275, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Outer arm dynein light chain 1 protein
    Primary source
    TAIR:AT1G48540
    Locus tag
    AT1G48540
    See related
    Araport:AT1G48540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.16; T1N15_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (17945369..17950598)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GLU-ADT subunit B Neighboring gene proteasome inhibitor-like protein Neighboring gene Vacuolar protein sorting-associated protein 26 Neighboring gene uncharacterized protein Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene nuclear localized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103750.4
    NM_202263.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Outer arm dynein light chain 1 protein
    NP_175287.2
    • Outer arm dynein light chain 1 protein; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT3G17920.1); Has 8139 Blast hits to 5951 proteins in 446 species: Archae - 0; Bacteria - 3162; Metazoa - 3134; Fungi - 466; Plants - 504; Viruses - 10; Other Eukaryotes - 863 (source: NCBI BLink).
    NP_973992.1
    • Outer arm dynein light chain 1 protein; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT3G17920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17945369..17950598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333342.1 → NP_001320459.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMY4, A0A654EID6

    2. NM_103750.4 → NP_175287.2  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175287.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5F2, A0A654EID6, F4HYH4
      Conserved Domains (4) summary
      sd00031
      Location:194 → 214
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:113 → 149
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:67 → 295
      internalin_A; class 1 internalin InlA
      cd21340
      Location:185 → 330
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    3. NM_202263.1 → NP_973992.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973992.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EID6, F4HYH5
      Conserved Domains (4) summary
      cd00116
      Location:189 → 297
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:194 → 214
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:113 → 149
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:237 → 295
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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