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    VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819317, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VGDH1
    Official Full Name
    Plant invertase/pectin methylesterase inhibitor superfamily
    Primary source
    TAIR:AT2G47030
    Locus tag
    AT2G47030
    See related
    Araport:AT2G47030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M4.14
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    Genomic context

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    See VGDH1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19324134..19326484, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene calcium/calcium/calmodulin-dependent Serine/Threonine-kinase Neighboring gene Peptide chain release factor 1 Neighboring gene ncRNA Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VANGUARD1 encodes a pectin methylesterase that enhances pollen tube growth in the Arabidopsis style and transmitting tract. Jiang L, et al. Plant Cell, 2005 Feb. PMID 15659637, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130271.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Plant invertase/pectin methylesterase inhibitor superfamily
    NP_182226.1
    • VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47040.1); Has 2990 Blast hits to 2923 proteins in 471 species: Archae - 6; Bacteria - 907; Metazoa - 1; Fungi - 197; Plants - 1853; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19324134..19326484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130271.3 → NP_182226.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182226.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80722, Q5MFV7, Q8H194, Q9T0P8
      UniProtKB/TrEMBL
      A0A178VLC3, A0A654F3V7
      Conserved Domains (3) summary
      PLN02197
      Location:1 → 588
      PLN02197; pectinesterase
      cd15798
      Location:44 → 188
      PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
      cl01911
      Location:276 → 572
      Pectinesterase; Pectinesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80722.1

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