U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Serine carboxypeptidase S28 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829777, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Serine carboxypeptidase S28 family protein
    Primary source
    TAIR:AT4G36195
    Locus tag
    AT4G36195
    See related
    Araport:AT4G36195
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (17126932..17130023)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 76 Neighboring gene uncharacterized protein Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene Serine carboxypeptidase S28 family protein Neighboring gene tRNA-Glu Neighboring gene transmembrane/coiled-coil protein (DUF726)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001036718.2
    NM_001204007.1
    NM_119787.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type exopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Serine carboxypeptidase S28 family protein
    NP_001031795.1
    • Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: stem, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190936.1
    • Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36190.1).
    NP_567999.1
    • Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: stem, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17126932..17130023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001204007.1 → NP_001190936.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190936.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4U9, A0A654FW01, Q67X97, Q67ZA2, Q94CC6
      Conserved Domains (1) summary
      cl21494
      Location:52 → 441
      Abhydrolase; alpha/beta hydrolases

    2. NM_119787.3 → NP_567999.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567999.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4U9, A0A654FW01, Q67X97, Q67ZA2, Q94CC6
      Conserved Domains (1) summary
      cl21494
      Location:52 → 441
      Abhydrolase; alpha/beta hydrolases

    3. NM_001036718.2 → NP_001031795.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031795.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FW01, Q67X97, Q67ZA2, Q683F9
      Conserved Domains (1) summary
      cl21494
      Location:52 → 458
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.