U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    integral membrane hemolysin-III-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819133, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    integral membrane hemolysin-III-like protein
    Primary source
    TAIR:AT2G45250
    Locus tag
    AT2G45250
    See related
    Araport:AT2G45250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4L23.24
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (18661460..18663064)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1A Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene myosin-4 protein (DUF641) Neighboring gene glycoprotease 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The DREAM complex represses growth in response to DNA damage in Arabidopsis. Lang L, et al. Life Sci Alliance, 2021 Dec. PMID 34583930, Free PMC Article
    2. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
    3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084593.1
    NM_001337120.1
    NM_130088.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DRM complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    integral membrane hemolysin-III-like protein
    NP_001078062.1
    • Integral membrane protein hemolysin-III homolog; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 122 Blast hits to 120 proteins in 32 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 9; Plants - 83; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_182050.2
    • Integral membrane protein hemolysin-III homolog; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 111 Blast hits to 109 proteins in 30 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 6; Plants - 75; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18661460..18663064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130088.3 → NP_182050.2  integral membrane hemolysin-III-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182050.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F3B9, F4IW42, Q0WNL0

    2. NM_001337120.1 → NP_001324110.1  integral membrane hemolysin-III-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ17, Q0WNL0

    3. NM_001084593.1 → NP_001078062.1  integral membrane hemolysin-III-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078062.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRU4, Q0WNL0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.