U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SLP3 subtilisin-like serine protease 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816434, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SLP3
    Official Full Name
    subtilisin-like serine protease 3
    Primary source
    TAIR:AT2G19170
    Locus tag
    AT2G19170
    See related
    Araport:AT2G19170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    subtilisin-like serine protease 3; T20K24.19; T20K24_19
    Summary
    Encodes a novel subtilisin-like serine protease.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SLP3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (8313671..8318596, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene reverse transcriptase-like protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene FLG22-induced receptor-like kinase 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Expression of subtilisin-like serine proteases in Arabidopsis thaliana is cell-specific and responds to jasmonic acid and heavy metals with developmental differences. Golldack D, et al. Physiol Plant, 2003 May. PMID 12702015
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001335625.1
    NM_127474.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type peptidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    subtilisin-like serine protease 3
    NP_565447.1
    • subtilisin-like serine protease 3 (SLP3); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: middle lamella-containing extracellular matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: PA-domain containing subtilase family protein (TAIR:AT4G30020.1); Has 7824 Blast hits to 6803 proteins in 1147 species: Archae - 185; Bacteria - 4676; Metazoa - 73; Fungi - 358; Plants - 1850; Viruses - 0; Other Eukaryotes - 682 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8313671..8318596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127474.4 → NP_565447.1  subtilisin-like serine protease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565447.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64481
      UniProtKB/TrEMBL
      A0A178VWQ1, A0A5S9WZJ2
      Conserved Domains (5) summary
      cd04852
      Location:127 → 630
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:373 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:21 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:716 → 810
      fn3_6; Fibronectin type-III domain
      cl10459
      Location:528 → 672
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    2. NM_001335625.1 → NP_001324171.1  subtilisin-like serine protease 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64481
      UniProtKB/TrEMBL
      A0A178VWQ1, A0A5S9WZJ2
      Conserved Domains (5) summary
      cd04852
      Location:127 → 630
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:373 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:21 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:716 → 810
      fn3_6; Fibronectin type-III domain
      cl10459
      Location:528 → 672
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64481.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools