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    LCD1 reticulata-like protein, putative (DUF3411) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818362, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LCD1
    Official Full Name
    reticulata-like protein, putative (DUF3411)
    Primary source
    TAIR:AT2G37860
    Locus tag
    AT2G37860
    See related
    Araport:AT2G37860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOWER CELL DENSITY 1; T8P21.23; T8P21_23
    Summary
    Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae
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    Genomic context

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    See LCD1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (15856528..15858986)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae. Barth C, et al. Plant J, 2003 Jul. PMID 12848826
    2. Bundle sheath cells and cell-specific plastid development in Arabidopsis leaves. Kinsman EA, et al. Development, 1998 May. PMID 9550714
    3. Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family. Pérez-Pérez JM, et al. Plant Physiol, 2013 Jun. PMID 23596191, Free PMC Article
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036429.2
    NM_001336677.1
    NM_179956.2
    NM_179957.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photoperiodism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to reactive oxygen species IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    reticulata-like protein, putative (DUF3411)
    NP_001031506.1
    • LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850287.1
    • LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 533 Blast hits to 494 proteins in 88 species: Archae - 2; Bacteria - 54; Metazoa - 55; Fungi - 24; Plants - 316; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink).
    NP_850288.2
    • LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 533 Blast hits to 494 proteins in 88 species: Archae - 2; Bacteria - 54; Metazoa - 55; Fungi - 24; Plants - 316; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15856528..15858986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036429.2 → NP_001031506.1  reticulata-like protein, putative (DUF3411) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031506.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFK5, C0Z2Z2, Q8RXC6
      UniProtKB/TrEMBL
      A0A178VQ99, A0A5S9X4Y8
      Conserved Domains (1) summary
      pfam11891
      Location:208 → 386
      DUF3411; Domain of unknown function (DUF3411)

    2. NM_001336677.1 → NP_001324059.1  reticulata-like protein, putative (DUF3411) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFK5, C0Z2Z2, Q8RXC6
      UniProtKB/TrEMBL
      A0A178VQ99, A0A5S9X4Y8

    3. NM_179956.2 → NP_850287.1  reticulata-like protein, putative (DUF3411) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850287.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQ99, A0A5S9X4Y8
      Conserved Domains (1) summary
      pfam11891
      Location:208 → 347
      DUF3411; Domain of unknown function (DUF3411)

    4. NM_179957.3 → NP_850288.2  reticulata-like protein, putative (DUF3411) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850288.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQ99, A0A5S9X4Y8
      Conserved Domains (1) summary
      pfam11891
      Location:208 → 347
      DUF3411; Domain of unknown function (DUF3411)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9DFK5.1

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