U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DNA-binding storekeeper protein-related transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817106, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    DNA-binding storekeeper protein-related transcriptional regulator
    Primary source
    TAIR:AT2G25650
    Locus tag
    AT2G25650
    See related
    Araport:AT2G25650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3N11.10; F3N11_10
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (10914511..10916216)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase-like protein Neighboring gene beta glucosidase 14 Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene embryo defective 2410 Neighboring gene uncharacterized protein Neighboring gene molybdate transporter 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. GeBP/GPL transcription factors regulate a subset of CPR5-dependent processes. Perazza D, et al. Plant Physiol, 2011 Nov. PMID 21875893, Free PMC Article
    2. GeBP and GeBP-like proteins are noncanonical leucine-zipper transcription factors that regulate cytokinin response in Arabidopsis. Chevalier F, et al. Plant Physiol, 2008 Mar. PMID 18162594, Free PMC Article
    3. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Nietzsche M, et al. Plant Physiol, 2018 Feb. PMID 29192025, Free PMC Article
    4. GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Curaba J, et al. Plant J, 2003 Jan. PMID 12535344
    5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GeBP/GPLs regulate a set of genes that represents a subset of the CPR5 pathway.[GPL1]
      Title: GeBP/GPL transcription factors regulate a subset of CPR5-dependent processes.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_128124.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding storekeeper protein-related transcriptional regulator
    NP_565602.1
    • DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00270.1); Has 3870 Blast hits to 2696 proteins in 325 species: Archae - 4; Bacteria - 248; Metazoa - 996; Fungi - 327; Plants - 391; Viruses - 98; Other Eukaryotes - 1806 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10914511..10916216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128124.3 → NP_565602.1  DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565602.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYD2, Q9SL98
      UniProtKB/TrEMBL
      A0A654EW66
      Conserved Domains (1) summary
      pfam04504
      Location:69 → 158
      DUF573; Protein of unknown function, DUF573
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYD2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools