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    Rubber elongation factor protein (REF) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843057, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rubber elongation factor protein (REF)
    Primary source
    TAIR:AT1G67360
    Locus tag
    AT1G67360
    See related
    Araport:AT1G67360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N21.18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (25236781..25238216, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene HCP-like superfamily protein with MYND-type zinc finger Neighboring gene NADH-ubiquinone oxidoreductase Neighboring gene ncRNA Neighboring gene DNA-binding HORMA family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis LDIP protein locates at a confined area within the lipid droplet surface and favors lipid droplet formation. Coulon D, et al. Biochimie, 2020 Feb. PMID 31568826
    2. AtSRP1, SMALL RUBBER PARTICLE PROTEIN HOMOLOG, functions in pollen growth and development in Arabidopsis. Chi YH, et al. Biochem Biophys Res Commun, 2016 Jun 24. PMID 27208780
    3. LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis. Pyc M, et al. Plant Cell, 2021 Sep 24. PMID 34244767, Free PMC Article
    4. Arabidopsis Small Rubber Particle Protein Homolog SRPs Play Dual Roles as Positive Factors for Tissue Growth and Development and in Drought Stress Responses. Kim EY, et al. Plant Physiol, 2016 Apr. PMID 26903535, Free PMC Article
    5. Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells. Gidda SK, et al. Plant Physiol, 2016 Apr. PMID 26896396, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis LDIP protein locates at a confined area within the lipid droplet surface and favors lipid droplet formation. [AtLDAP1]
      Title: Arabidopsis LDIP protein locates at a confined area within the lipid droplet surface and favors lipid droplet formation.
    2. LDAPs are required for the maintenance and regulation of lipid droplets in plant cells and perform nonredundant functions in various physiological contexts, including stress response and postgerminative growth.[LDAP1]
      Title: Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells.
    3. AtSRP1, SMALL RUBBER PARTICLE PROTEIN HOMOLOG is localized to lipid droplets and endoplasmatic reticulum in plant cells. atsrp1 mutants exhibit reduced fertility and abnormal seed shape. [AtSRP1]
      Title: AtSRP1, SMALL RUBBER PARTICLE PROTEIN HOMOLOG, functions in pollen growth and development in Arabidopsis.
    4. Arabidopsis SRPs (SRP1, SRP2, and SRP3) play dual roles as positive factors in postgermination growth and the drought stress tolerance response.
      Title: Arabidopsis Small Rubber Particle Protein Homolog SRPs Play Dual Roles as Positive Factors for Tissue Growth and Development and in Drought Stress Responses.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105404.3
    NM_179525.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within developmental vegetative growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid droplet organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Rubber elongation factor protein (REF)
    NP_176904.1
    • Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 125 Blast hits to 125 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849856.1
    • Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 125 Blast hits to 125 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25236781..25238216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179525.3 → NP_849856.1  Rubber elongation factor protein (REF) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849856.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FYF7
      UniProtKB/TrEMBL
      A0A5S9WSI2, A0A7G2E323
      Conserved Domains (1) summary
      pfam05755
      Location:7 → 208
      REF; Rubber elongation factor protein (REF)

    2. NM_105404.3 → NP_176904.1  Rubber elongation factor protein (REF) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176904.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FYF7
      UniProtKB/TrEMBL
      A0A5S9WSI2, A0A7G2E323
      Conserved Domains (1) summary
      pfam05755
      Location:7 → 208
      REF; Rubber elongation factor protein (REF)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYF7.1

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