U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Phosphoenolpyruvate carboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844041, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Phosphoenolpyruvate carboxylase family protein
    Primary source
    TAIR:AT1G77060
    Locus tag
    AT1G77060
    See related
    Araport:AT1G77060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22K20.14; F22K20_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (28951643..28953580, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene tRNA-Gln Neighboring gene putative DEAD-box ATP-dependent RNA helicase 29 Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_106356.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carboxyvinyl-carboxyphosphonate phosphorylmutase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Phosphoenolpyruvate carboxylase family protein
    NP_565148.1
    • Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G21440.1); Has 8811 Blast hits to 8811 proteins in 1498 species: Archae - 116; Bacteria - 4944; Metazoa - 32; Fungi - 514; Plants - 174; Viruses - 0; Other Eukaryotes - 3031 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28951643..28953580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106356.3 → NP_565148.1  Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565148.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49290, Q8LFA2
      UniProtKB/TrEMBL
      A0A178W7S1, A0A5S9WV16, Q8VYA2
      Conserved Domains (1) summary
      cd00377
      Location:45 → 291
      ICL_PEPM; Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49290.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools