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    transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818217, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF247)
    Primary source
    TAIR:AT2G36430
    Locus tag
    AT2G36430
    See related
    Araport:AT2G36430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O11.6; F1O11_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (15289975..15291763)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transcriptional activator (DUF662) Neighboring gene nucleolin-like protein Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129200.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF247)
    NP_181184.1
    • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22550.2); Has 1137 Blast hits to 1027 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15289975..15291763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129200.4 → NP_181184.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181184.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W094, A0A654EZF8, Q9SJR2
      Conserved Domains (1) summary
      pfam03140
      Location:47 → 421
      DUF247; Plant protein of unknown function
    Nucleotide Protein
    Heading Accession and Version

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