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    plant/protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837959, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plant/protein
    Primary source
    TAIR:AT1G13990
    Locus tag
    AT1G13990
    See related
    Araport:AT1G13990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A19.8; F7A19_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (4794664..4796599)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 4 Neighboring gene beta-hexosaminidase (DUF1336) Neighboring gene sec7 domain-containing protein Neighboring gene VH1-interacting kinase Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001160862.1
    NM_001160863.1
    NM_101265.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant/protein
    NP_001154334.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001154335.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_563935.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4794664..4796599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101265.4 → NP_563935.1  plant/protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563935.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMB0, Q94F46, Q9XI88

    2. NM_001160863.1 → NP_001154335.1  plant/protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154335.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HSN5, Q9XI88

    3. NM_001160862.1 → NP_001154334.1  plant/protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154334.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HSN6, Q9LMF9
    Nucleotide Protein
    Heading Accession and Version

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