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    ARF17 auxin response factor 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844120, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF17
    Official Full Name
    auxin response factor 17
    Primary source
    TAIR:AT1G77850
    Locus tag
    AT1G77850
    See related
    Araport:AT1G77850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 17; F28K19.6; F28K19_6
    Summary
    Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes.
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    Genomic context

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    See ARF17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (29272074..29275507)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Translation initiation factor IF2/IF5 Neighboring gene BPS1-like protein Neighboring gene ncRNA Neighboring gene Rhomboid-related intramembrane serine protease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fine regulation of ARF17 for anther development and pollen formation. Wang B, et al. BMC Plant Biol, 2017 Dec 19. PMID 29258431, Free PMC Article
    2. AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis. Yang J, et al. Plant Physiol, 2013 Jun. PMID 23580594, Free PMC Article
    3. AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence. Xu XF, et al. Plant Physiol, 2019 Oct. PMID 31345954, Free PMC Article
    4. Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Sorin C, et al. Plant Cell, 2005 May. PMID 15829601, Free PMC Article
    5. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, et al. Plant Cell, 2005 May. PMID 15829600, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence.
      Title: AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence.
    2. This work shows that ARF17 plays an essential role in anther development and pollen formation, and ARF17 expression under miR160 regulation is critical for its function during anther development.
      Title: Fine regulation of ARF17 for anther development and pollen formation.
    3. ARF17 is essential for pollen wall patterning in Arabidopsis by modulating primexine formation at least partially through direct regulation of CalS5 gene expression.
      Title: AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis.
    4. Phenotypic plasticity of adventitious rooting is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. ARF17, a target of miR160, is a negative regulator.
      Title: Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334800.1
    NM_106434.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within adventitious root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within anatomical structure morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within auxin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within callose deposition in cell wall IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen wall assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of anther dehiscence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin response factor 17
    NP_565161.1
    • auxin response factor 17 (ARF17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: anatomical structure morphogenesis, auxin mediated signaling pathway, adventitious root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 16 (TAIR:AT4G30080.1); Has 1238 Blast hits to 1221 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1226; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29272074..29275507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106434.2 → NP_565161.1  auxin response factor 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565161.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B2CTG7, B2CTG8, B2CTH0, Q84WU6, Q93ZY5, Q9CA12, Q9SH16
      UniProtKB/TrEMBL
      A0A178WR63
      Conserved Domains (2) summary
      pfam02362
      Location:119 → 219
      B3; B3 DNA binding domain
      pfam06507
      Location:274 → 356
      Auxin_resp; Auxin response factor

    2. NM_001334800.1 → NP_001322496.1  auxin response factor 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WP26, A0A1P8AU56
      Conserved Domains (2) summary
      pfam02362
      Location:119 → 219
      B3; B3 DNA binding domain
      pfam06507
      Location:274 → 356
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WU6.1

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