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    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838163, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    Primary source
    TAIR:AT1G15930
    Locus tag
    AT1G15930
    See related
    Araport:AT1G15930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24D18.3; T24D18_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (5471316..5473048)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene XH/XS domain-containing protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    5. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101461.5
    NM_179342.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    NP_173045.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
    NP_849673.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5471316..5473048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179342.3 → NP_849673.1  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849673.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S9P1
      UniProtKB/TrEMBL
      A0A178W9Y0, A0A5S9ULT1, A0A7G2DT56
      Conserved Domains (1) summary
      pfam01248
      Location:29 → 124
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    2. NM_101461.5 → NP_173045.1  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173045.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S9P1
      UniProtKB/TrEMBL
      A0A178W9Y0, A0A5S9ULT1, A0A7G2DT56
      Conserved Domains (1) summary
      pfam01248
      Location:29 → 124
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S9P1.1

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