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    Vacuolar protein sorting-associated protein 26 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841276, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar protein sorting-associated protein 26
    Primary source
    TAIR:AT1G48550
    Locus tag
    AT1G48550
    See related
    Araport:AT1G48550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.17; T1N15_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (17950569..17952743, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GLU-ADT subunit B Neighboring gene proteasome inhibitor-like protein Neighboring gene Outer arm dynein light chain 1 protein Neighboring gene uncharacterized protein Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene nuclear localized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Vacuolar Protein Sorting 26C encodes an evolutionarily conserved large retromer subunit in eukaryotes that is important for root hair growth in Arabidopsis thaliana. Jha SG, et al. Plant J, 2018 May. PMID 29495075
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These studies illustrate that GFP-HsDSCR3 is able to complement the vps26c root hair phenotype in Arabidopsis, indicating a deep conservation of cellular function for this large retromer subunit across plant and animal kingdoms.
      Title: Vacuolar Protein Sorting 26C encodes an evolutionarily conserved large retromer subunit in eukaryotes that is important for root hair growth in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001198243.1
    NM_103751.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within retrograde transport, endosome to Golgi IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell tip growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    colocalizes_with endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular anatomical structure ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of retromer complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Vacuolar protein sorting-associated protein 26
    NP_001185172.1
    • Vacuolar protein sorting-associated protein 26; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377).
    NP_175288.1
    • Vacuolar protein sorting-associated protein 26; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); Has 299 Blast hits to 296 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 26; Plants - 78; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17950569..17952743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198243.1 → NP_001185172.1  Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185172.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HYH7, Q8GYE9
      Conserved Domains (1) summary
      cl22903
      Location:14 → 279
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    2. NM_103751.3 → NP_175288.1  Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175288.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB45, F4HYH6, Q8GYE9
      Conserved Domains (1) summary
      cl22903
      Location:14 → 282
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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