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    FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839180, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FAD-binding Berberine family protein
    Primary source
    TAIR:AT1G26380
    Locus tag
    AT1G26380
    See related
    Araport:AT1G26380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1K7.24; T1K7_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (9126737..9128568, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene methyl esterase 13 Neighboring gene RNA helicase family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. Brown BA, et al. Plant Physiol, 2008 Feb. PMID 18055587, Free PMC Article
    2. The AP2/ERF transcription factor AtERF73/HRE1 modulates ethylene responses during hypoxia in Arabidopsis. Yang CY, et al. Plant Physiol, 2011 May. PMID 21398256, Free PMC Article
    3. A subcellular localization compendium of hydrogen peroxide-induced proteins. Inzé A, et al. Plant Cell Environ, 2012 Feb. PMID 21443605
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_102402.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    FAD-binding Berberine family protein
    NP_564244.1
    • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4658 Blast hits to 4519 proteins in 693 species: Archae - 70; Bacteria - 2063; Metazoa - 19; Fungi - 1653; Plants - 670; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9126737..9128568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102402.4 → NP_564244.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564244.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZC4
      UniProtKB/TrEMBL
      A0A178WL41, A0A5S9VY07, A0A654EEJ3
      Conserved Domains (2) summary
      pfam01565
      Location:78 → 214
      FAD_binding_4; FAD binding domain
      cl40730
      Location:78 → 525
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZC4.1

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