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    LisH and RanBPM domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837115, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LisH and RanBPM domains containing protein
    Primary source
    TAIR:AT1G06060
    Locus tag
    AT1G06060
    See related
    Araport:AT1G06060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21E18.11; T21E18_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (1832941..1834861)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene B-box zinc finger family protein Neighboring gene ENHANCED DISEASE RESISTANCE-like protein (DUF1336) Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene ncRNA Neighboring gene delta 9 desaturase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001331611.1
    NM_100487.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    LisH and RanBPM domains containing protein
    NP_563758.1
    • LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 872 Blast hits to 770 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 136; Plants - 208; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1832941..1834861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100487.5 → NP_563758.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563758.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W491, A0A7G2DRJ0, Q9LNE1
      Conserved Domains (1) summary
      pfam10607
      Location:52 → 193
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    2. NM_001331611.1 → NP_001322834.1  LisH and RanBPM domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV86, A0A7G2DRJ0
    Nucleotide Protein
    Heading Accession and Version

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