U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CSLE1 cellulose synthase like E1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842035, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CSLE1
    Official Full Name
    cellulose synthase like E1
    Primary source
    TAIR:AT1G55850
    Locus tag
    AT1G55850
    See related
    Araport:AT1G55850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCSLE1; cellulose synthase like E1; F14J16.9; F14J16_9
    Summary
    encodes a protein similar to cellulose synthase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CSLE1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20876440..20879482)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase, putative (DUF1296) Neighboring gene coiled-coil protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene LOW protein: E3 ubiquitin ligase-like protein Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_104462.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cellulose synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cellulose synthase like E1
    NP_175981.2
    • cellulose synthase like E1 (CSLE1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase like G2 (TAIR:AT4G24000.1); Has 2588 Blast hits to 1976 proteins in 305 species: Archae - 7; Bacteria - 382; Metazoa - 5; Fungi - 13; Plants - 2129; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20876440..20879482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104462.4 → NP_175981.2  cellulose synthase like E1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175981.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56X66, Q8VZK9, Q9LG28
      UniProtKB/TrEMBL
      A0A178W3Y0, A0A5S9WQ20, W8PVZ2
      Conserved Domains (2) summary
      PLN02893
      Location:16 → 719
      PLN02893; Cellulose synthase-like protein
      cl11394
      Location:109 → 493
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZK9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools