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    LOX6 PLAT/LH2 domain-containing lipoxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843077, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOX6
    Official Full Name
    PLAT/LH2 domain-containing lipoxygenase family protein
    Primary source
    TAIR:AT1G67560
    Locus tag
    AT1G67560
    See related
    Araport:AT1G67560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana lipoxygenase 6; ATLOX6; F12B7.11; F12B7_11; lipoxygenase 6
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    Genomic context

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    See LOX6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (25319804..25324581)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene urease Neighboring gene zinc finger CONSTANS-like protein (DUF3537) Neighboring gene Protein kinase superfamily protein Neighboring gene Remorin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lipoxygenase6-dependent oxylipin synthesis in roots is required for abiotic and biotic stress resistance of Arabidopsis. Grebner W, et al. Plant Physiol, 2013 Apr. PMID 23444343, Free PMC Article
    2. Four 13-lipoxygenases contribute to rapid jasmonate synthesis in wounded Arabidopsis thaliana leaves: a role for lipoxygenase 6 in responses to long-distance wound signals. Chauvin A, et al. New Phytol, 2013 Jan. PMID 23171345
    3. Diversity of the enzymatic activity in the lipoxygenase gene family of Arabidopsis thaliana. Bannenberg G, et al. Lipids, 2009 Feb. PMID 18949503
    4. Lipoxygenase-mediated oxidation of polyunsaturated N-acylethanolamines in Arabidopsis. Kilaru A, et al. J Biol Chem, 2011 Apr 29. PMID 21372125, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LOX6-derived oxylipins are important for the responses to abiotic and biotic factors.
      Title: Lipoxygenase6-dependent oxylipin synthesis in roots is required for abiotic and biotic stress resistance of Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_105423.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables linoleate 13S-lipoxygenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within jasmonic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in jasmonic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in oxylipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to wounding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to wounding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    PLAT/LH2 domain-containing lipoxygenase family protein
    NP_176923.1
    • PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: oxidation reduction, growth; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1467 Blast hits to 1431 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 533; Fungi - 48; Plants - 781; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25319804..25324581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105423.3 → NP_176923.1  PLAT/LH2 domain-containing lipoxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176923.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLL0, Q56WC0, Q9CAG3
      UniProtKB/TrEMBL
      A0A178W1Z8, A0A5S9WSJ2
      Conserved Domains (1) summary
      PLN02305
      Location:3 → 917
      PLN02305; lipoxygenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAG3.1

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