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    COR314-TM2 cold regulated 314 thylakoid membrane 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839814, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COR314-TM2
    Official Full Name
    cold regulated 314 thylakoid membrane 2
    Primary source
    TAIR:AT1G29390
    Locus tag
    AT1G29390
    See related
    Araport:AT1G29390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COLD REGULATED 314 INNER MEMBRANE 2; cold regulated 314 thylakoid membrane 2; COR413IM2; F15D2.42
    Summary
    Integral membrane protein in the inner envelope of chloroplasts. Provide freezing tolerance.
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    Genomic context

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    See COR314-TM2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (10286067..10288103, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene RNA polymerase II degradation factor-like protein (DUF1296) Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene COLD REGULATED 314 INNER MEMBRANE 1 Neighboring gene MEI2-like protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope. Okawa K, et al. Plant Cell Environ, 2008 Oct. PMID 18643950
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102678.3
    NM_202207.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cold regulated 314 thylakoid membrane 2
    NP_564327.1
    • cold regulated 314 thylakoid membrane 2 (COR314-TM2); CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COLD REGULATED 314 INNER MEMBRANE 1 (TAIR:AT1G29395.1); Has 147 Blast hits to 144 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973936.1
    • cold regulated 314 thylakoid membrane 2 (COR314-TM2); CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COLD REGULATED 314 INNER MEMBRANE 1 (TAIR:AT1G29395.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10286067..10288103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102678.3 → NP_564327.1  cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564327.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I1G5, F4I1G6, Q8L813, Q8RXM0
      UniProtKB/TrEMBL
      A0A178WEF2, A0A5S9WA81, A0A7G2DZM7
      Conserved Domains (1) summary
      pfam05562
      Location:44 → 217
      WCOR413; Cold acclimation protein WCOR413

    2. NM_202207.1 → NP_973936.1  cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973936.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I1G5
      Conserved Domains (1) summary
      pfam05562
      Location:6 → 174
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I1G5.1

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