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    DEAD/DEAH box helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821294, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEAD/DEAH box helicase
    Primary source
    TAIR:AT3G02060
    Locus tag
    AT3G02060
    See related
    Araport:AT3G02060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1C9.16; F1C9_16
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (354360..358833)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transferase Neighboring gene senescence-related gene 3 Neighboring gene K+ uptake transporter 3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Cysteine proteinases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084623.1
    NM_111072.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEAD/DEAH box helicase
    NP_001078092.1
    • DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31156 Blast hits to 30938 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1548; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).
    NP_566160.1
    • DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      354360..358833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337379.1 → NP_001326158.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JFJ3, Q8H0S6, Q94JY9, Q9SGA4
      UniProtKB/TrEMBL
      A0A178VHR3, A0A5S9X8M5, A0A654F4U7
      Conserved Domains (1) summary
      COG1197
      Location:137 → 770
      Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]

    2. NM_111072.2 → NP_566160.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566160.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JFJ3, Q8H0S6, Q94JY9, Q9SGA4
      UniProtKB/TrEMBL
      A0A178VHR3, A0A5S9X8M5, A0A654F4U7
      Conserved Domains (1) summary
      COG1197
      Location:137 → 770
      Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]

    3. NM_001084623.1 → NP_001078092.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078092.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHR3
      Conserved Domains (4) summary
      smart00487
      Location:261 → 457
      DEXDc; DEAD-like helicases superfamily
      smart01058
      Location:144 → 241
      CarD_TRCF; CarD-like/TRCF domain
      cd00079
      Location:455 → 585
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:270 → 433
      DEAD; DEAD/DEAH box helicase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JFJ3.1

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