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    ATI2 mesoderm induction early response protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827659, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATI2
    Official Full Name
    mesoderm induction early response protein
    Primary source
    TAIR:AT4G00355
    Locus tag
    AT4G00355
    See related
    Araport:AT4G00355
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATG8-interacting protein 2
    Summary
    Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network.
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    Genomic context

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    See ATI2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (154635..156376)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene receptor-like protein kinase 4 Neighboring gene uncharacterized protein Neighboring gene MATE efflux family protein Neighboring gene miscRNA Neighboring gene cytochrome P450, family 86, subfamily A, polypeptide 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors. Wu J, et al. Autophagy, 2021 Nov. PMID 33487099, Free PMC Article
    2. The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties. Sjøgaard IMZ, et al. Biochem J, 2019 Feb 5. PMID 30642888
    3. A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Honig A, et al. Plant Cell, 2012 Jan. PMID 22253227, Free PMC Article
    4. Arabidopsis ATG8-INTERACTING PROTEIN1 is involved in autophagy-dependent vesicular trafficking of plastid proteins to the vacuole. Michaeli S, et al. Plant Cell, 2014 Oct. PMID 25281689, Free PMC Article
    5. The N-coil and the globular N-terminal domain of plant ARGONAUTE1 are interaction hubs for regulatory factors. Bressendorff S, et al. Biochem J, 2023 Jul 12. PMID 37278687

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors.
      Title: ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors.
    2. The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties.
      Title: The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties.
    3. ATI1 and ATI2 are partially associated with the endoplasmic reticulum (ER) membrane network, whereas upon exposure to carbon starvation, they become mainly associated with newly identified spherical compartments that dynamically move along the ER network.
      Title: A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036488.1
    NM_116259.3
    NM_178941.4
    NM_178943.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mesoderm induction early response protein
    NP_001031565.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_567174.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849272.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849274.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      154635..156376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_178941.4 → NP_849272.1  mesoderm induction early response protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849272.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH56, Q27GJ8, Q3EAE4, Q8VY98
      UniProtKB/TrEMBL
      A0A178V043, A0A5S9XQB9

    2. NM_116259.3 → NP_567174.1  mesoderm induction early response protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567174.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH56, Q27GJ8, Q3EAE4, Q8VY98
      UniProtKB/TrEMBL
      A0A178V043, A0A5S9XQB9

    3. NM_001036488.1 → NP_001031565.1  mesoderm induction early response protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031565.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V043, A0A5S9XQB9

    4. NM_178943.3 → NP_849274.2  mesoderm induction early response protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849274.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH56, Q27GJ8, Q3EAE4, Q8VY98
      UniProtKB/TrEMBL
      A0A178V043, A0A5S9XQB9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY98.1

    Gene LinkOut

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