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    iqd17 IQ-domain 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828002, updated on 18-Sep-2024

    Summary

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    Official Symbol
    iqd17
    Official Full Name
    IQ-domain 17
    Primary source
    TAIR:AT4G00820
    Locus tag
    AT4G00820
    See related
    Araport:AT4G00820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A_TM018A10.13; A_TM018A10_13; IQ-domain 17; T18A10.11; T18A10_11
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    Genomic context

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    See iqd17 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (349025..351550)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene GRF1-interacting factor 3 Neighboring gene monopolar spindle protein (DUF1138)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116308.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IQ-domain 17
    NP_567191.2
    • IQ-domain 17 (iqd17); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 18 (TAIR:AT1G01110.2); Has 1332 Blast hits to 1131 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 172; Fungi - 58; Plants - 857; Viruses - 43; Other Eukaryotes - 188 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      349025..351550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116308.4 → NP_567191.2  IQ-domain 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567191.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JHN2, O23094, Q0WPW7
      UniProtKB/TrEMBL
      A0A5S9XPI5, A0A654FKQ6
      Conserved Domains (2) summary
      pfam13178
      Location:384 → 487
      DUF4005; Protein of unknown function (DUF4005)
      cd22307
      Location:125 → 184
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JHN2.1

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